I think your best plan is to remove the EGR valve and possibly the upper intake plenum, as in the plastic part of the intake that the throttle body bolts to. That'll give you access to both ends of the EGR passages. Be sure to buy gaskets for the EGR valve, the plenum AND the o-ring that goes around the injector connector.
That said, are you sure you're dealing with plugged passages? :huh: Because I've had the lower intakes off of these engines many times, and never found their EGR passages to be even remotely plugged. This is probably the only EGR system that never really suffered from severe plugging.
Usually, I find that a.) A piece of carbon from the exhaust found it's way to the EGR valve, or b.) Someone installed a 'screened' EGR valve gasket, and that's become plugged. I've also seen the EGR tube from the exhaust break in two, but that's less common.
In all three cases, it might be as easy as pulling the valve off for a visual inspection.